Veja /etc/crontab
Você pode configurá-lo para iniciar algo com um "usuário" e ter opções
string meaning
------ -------
@reboot Run once, at startup.
@yearly Run once a year, "0 0 1 1 *".
@annually (same as @yearly)
@monthly Run once a month, "0 0 1 * *".
@weekly Run once a week, "0 0 * * 0".
@daily Run once a day, "0 0 * * *".
@midnight (same as @daily)
@hourly Run once an hour, "0 * * * *".
Padrão em qualquer máquina Ubuntu:
# /etc/crontab: system-wide crontab
# Unlike any other crontab you don't have to run the 'crontab'
# command to install the new version when you edit this file
# and files in /etc/cron.d. These files also have username fields,
# that none of the other crontabs do.
SHELL=/bin/sh
PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin
# m h dom mon dow user command
17 * * * * root cd / && run-parts --report /etc/cron.hourly
25 6 * * * root test -x /usr/sbin/anacron || ( cd / && run-parts --report /etc/cron.daily )
47 6 * * 7 root test -x /usr/sbin/anacron || ( cd / && run-parts --report /etc/cron.weekly )
52 6 1 * * root test -x /usr/sbin/anacron || ( cd / && run-parts --report /etc/cron.monthly )
Então basicamente você quer algo como:
@reboot {your_user} {your_script}