Uma pesquisa pela rede traz alguns programas que podem ajudar. Eles são todos freeware .
BES - Codificador de Batalha Shirase
BES is a small tool which limits the CPU usage for a specified process: for instance, you can limit the CPU usage of a process which would use CPU 100%, down to 50% (or any percentage you like). With this, you can use other programs comfortably while doing something CPU-intensive in the background. By limiting the CPU load, you can also cool down your CPU immediately when it happens to get too hot. Of course the processing speed will slow down proportionally if you limit the CPU usage, but it should be much better than crashing because of heat or (in the worst scenario) having your computer broken with a burned CPU.
Process Tamer
Process Tamer is a tiny (140k) and super efficient utility for Microsoft Windows XP/2K/NT/Vista/Win7 that runs in your system tray and constantly monitors the cpu usage of other processes. When it sees a process that is overloading your cpu, it reduces the priority of that process temporarily, until its cpu usage returns to a reasonable level.
Process Lasso
Process Lasso is a unique new technology that will improve your PC's responsiveness and stability during periods of high CPU load. Windows, by design, allows programs to monopolize your CPU without restraint -- leading to freezes, hangs, and micro-lags. Process Lasso's ProBalance (Process Balance) technology intelligently adjusts the priorities of running programs so that badly behaved processes won't negatively impact the responsiveness of your PC.