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Fixing this (in most cases but probably not all) is quite simple: look for path of the file that caused the error - in my first example that would be "/var/cache/apt/archives/smplayer_0.6.9+svn3595-1ppa1~maverick1_i386.deb", an run the following command:
sudo dpkg -i --force-overwrite /var/cache/apt/archives/smplayer_0.6.9+svn3595-1ppa1~maverick1_i386.deb
If "--force-overwrite" doesn't work, you can try "--force-all" instead.
In the above command, replace "/var..." with the exact path to the .deb that caused the error on your computer. If you've installed it from a repository, the .deb is located in /var/cache/apt/archives but if not, it's wherever you've downloaded it (either way, the error should display its exact path so you don't have to look for it manually).
What the above command does is force the overwrite of the file that exists in 2 packages and caused the error. Then, to make sure all the packages have installed successfully, also run the following command:
sudo apt-get install -f