Use rsync -azH --inplace
Há vários avisos sobre essa opção na página do manual:
--inplace
This option changes how rsync transfers a file when the file's data needs to be updated: instead of the default method of creating a new copy of the file and moving it into place when it is complete, rsync instead writes the updated data directly to the destination file. This has several effects:
(1) in-use binaries cannot be updated (either the OS will prevent this from happening, or binaries that attempt to swap-in their data will misbehave or crash),
(2) the file's data will be in an inconsistent state during the transfer,
(3) a file's data may be left in an inconsistent state after the transfer if the transfer is interrupted or if an update fails,
(4) a file that does not have write permissions can not be updated, and
(5) the efficiency of rsync's delta-transfer algorithm may be reduced if some data in the destination file is overwritten before it can be copied to a position later in the file (one exception to this is if you combine this option with --backup, since rsync is smart enough to use the backup file as the basis file for the transfer).
WARNING: you should not use this option to update files that are being accessed by others, so be careful when choosing to use this for a copy. This option is useful for transfer of large files with block-based changes or appended data, and also on systems that are disk bound, not network bound.
The option implies --partial (since an interrupted transfer does not delete the file), but conflicts with --partial-dir and --delay-updates. Prior to rsync 2.6.4 --inplace was also incompatible with --compare-dest and --link-dest.