Referência indefinida para gzopen64 ao construir samtools

2

Estou tentando instalar o pacote de software samtools0.1.19. Quando executo make , recebo erros:

gcc -g -Wall -O2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o  libbam.a -Lbcftools -lbcf  -lcurses  -lm -lz -lpthread
phase.o: In function 'loadpos':
/illumina/data/galaxy/apps/samtools-0.1.19/phase.c:475: undefined reference to 'gzopen64'
bedcov.o: In function 'main_bedcov':
/illumina/data/galaxy/apps/samtools-0.1.19/bedcov.c:69: undefined reference to 'gzopen64'
libbam.a(bam_import.o): In function '__bam_get_lines':
/illumina/data/galaxy/apps/samtools-0.1.19/bam_import.c:76: undefined reference to 'gzopen64'
libbam.a(bam_import.o): In function 'sam_open':
/illumina/data/galaxy/apps/samtools-0.1.19/bam_import.c:472: undefined reference to 'gzopen64'
libbam.a(bam_import.o): In function 'sam_header_read2':
/illumina/data/galaxy/apps/samtools-0.1.19/bam_import.c:126: undefined reference to 'gzopen64'
libbam.a(bedidx.o):/illumina/data/galaxy/apps/samtools-0.1.19/bedidx.c:107: more undefined references to 'gzopen64' follow
collect2: ld returned 1 exit status
make[1]: *** [samtools] Error 1
make[1]: Leaving directory '/illumina/data/galaxy/apps/samtools-0.1.19'
make: *** [all-recur] Error 1

Eu tentei instalar os pacotes dos quais depende e até mesmo usei elrepo para o Red Hat Linux , mas não t trabalho.

    
por sridhar 01.06.2013 / 08:21

0 respostas