O ntfs-3g possui uma opção que forçará a exclusão do arquivo de hibernação e forçará uma montagem rw:
# mount -t ntfs-3g -o remove_hiberfile /dev/sdXX /media/windows
De ntfs-3g (8):
SYNOPSIS
mount -t ntfs-3g [-o option[,...]] volume mount_point
OPTIONS
remove_hiberfile
Unlike in case of read-only mount, the read-write mount is denied if the NTFS volume is hibernated. One needs either to resume Windows and shutdown it properly, or use this option which will remove the Windows hibernation file. Please note, this means that the saved Windows session will be completely lost. Use this option under your own responsibility.