Condição: não é possível solucionar problemas de instalação com falha da biblioteca / módulo pywfdb de pip
Condições Diferenciais: dependenciens com falha de pywfdb
Excluir: upstart / systemd erros no design com runit no Ubuntu aqui desde o Ubuntu > = 14.10
Configurações
- CAMINHO
/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
- PYTHONPATH em branco em
$HOME/.bashrc
Fluxo de trabalho para dependências e instalação suja com muitos logs
-
Proposta de Edwinksl: sudo apt-get install python-pyrex
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following NEW packages will be installed:
python-pyrex
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 2 not fully installed or removed.
Need to get 181 kB of archives.
After this operation, 996 kB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pyrex all 0.9.8.5-2.1ubuntu1 [181 kB]
Fetched 181 kB in 0s (356 kB/s)
Selecting previously unselected package python-pyrex.
(Reading database ... 434011 files and directories currently installed.)
Preparing to unpack .../python-pyrex_0.9.8.5-2.1ubuntu1_all.deb ...
Unpacking python-pyrex (0.9.8.5-2.1ubuntu1) ...
Processing triggers for doc-base (0.10.7) ...
Processing 1 added doc-base file...
Registering documents with scrollkeeper...
Processing triggers for man-db (2.7.5-1) ...
Setting up runit (2.1.2-3ubuntu1) ...
- -
Setting up python-pyrex (0.9.8.5-2.1ubuntu1) ...
- -
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Fluxo de trabalho com instalação suja para não limpar após a instalação, para ver o que o pip estava tentando fazer sudo -H pip install --no-clean pywfdb
Collecting pywfdb
Using cached pywfdb-0.1.1.zip
Building wheels for collected packages: pywfdb
Running setup.py bdist_wheel for pywfdb ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_Tu9q1/pywfdb/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpemnpLdpip-wheel- --python-tag cp27:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/pywfdb
copying pywfdb/__init__.py -> build/lib.linux-x86_64-2.7/pywfdb
copying pywfdb/ecgcodes.py -> build/lib.linux-x86_64-2.7/pywfdb
package init file 'example/__init__.py' not found (or not a regular file)
creating build/lib.linux-x86_64-2.7/pywfdb/example
copying example/readinfo.py -> build/lib.linux-x86_64-2.7/pywfdb/example
copying example/plot.py -> build/lib.linux-x86_64-2.7/pywfdb/example
running build_ext
building 'pywfdb._pywfdb' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/pywfdb
creating build/temp.linux-x86_64-2.7/wfdb-10.4.4
creating build/temp.linux-x86_64-2.7/wfdb-10.4.4/lib
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I./wfdb-10.4.4/lib -I/usr/include/python2.7 -c pywfdb/_pywfdb.c -o build/temp.linux-x86_64-2.7/pywfdb/_pywfdb.o -Wno-uninitialized -Wno-unused
pywfdb/_pywfdb.c:15:22: fatal error: ecgcodes.h: No such file or directory
#include "ecgcodes.h"
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Failed building wheel for pywfdb
Running setup.py clean for pywfdb
Failed to build pywfdb
Installing collected packages: pywfdb
Running setup.py install for pywfdb ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_Tu9q1/pywfdb/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-gdKcwF-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/pywfdb
copying pywfdb/__init__.py -> build/lib.linux-x86_64-2.7/pywfdb
copying pywfdb/ecgcodes.py -> build/lib.linux-x86_64-2.7/pywfdb
package init file 'example/__init__.py' not found (or not a regular file)
creating build/lib.linux-x86_64-2.7/pywfdb/example
copying example/readinfo.py -> build/lib.linux-x86_64-2.7/pywfdb/example
copying example/plot.py -> build/lib.linux-x86_64-2.7/pywfdb/example
running build_ext
building 'pywfdb._pywfdb' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/pywfdb
creating build/temp.linux-x86_64-2.7/wfdb-10.4.4
creating build/temp.linux-x86_64-2.7/wfdb-10.4.4/lib
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I./wfdb-10.4.4/lib -I/usr/include/python2.7 -c pywfdb/_pywfdb.c -o build/temp.linux-x86_64-2.7/pywfdb/_pywfdb.o -Wno-uninitialized -Wno-unused
pywfdb/_pywfdb.c:15:22: fatal error: ecgcodes.h: No such file or directory
#include "ecgcodes.h"
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_Tu9q1/pywfdb/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-gdKcwF-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-_Tu9q1/pywfdb/
Abrir
- Por que falha na criação de roda para pywfdb ?
-
Por que o seguinte erro foi reproduzido aqui a partir do registro completo?
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_Tu9q1/pywfdb/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-gdKcwF-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-_Tu9q1/pywfdb/
Métodos de solução de problemas
Pip módulos locais onde você não vê nenhum wfdb encontrado pelo primeiro conjunto de comandos do Adam
" https://stackoverflow.com/a/23885252/54964 "
['adium-theme-ubuntu==0.3.4', 'alabaster==0.7.8', 'auxlib==0.0.37', 'babel==2.3.4', 'backports-abc==0.4', 'backports.shutil-get-terminal-size==1.0.0', 'backports.ssl-match-hostname==3.5.0.1', 'beautifulsoup4==4.4.1', 'ccsm==0.9.12.2', 'certifi==2016.2.28', 'chardet==2.3.0', 'compizconfig-python==0.9.12.2', 'configparser==3.5.0', 'cycler==0.10.0', 'decorator==4.0.9', 'docutils==0.12', 'duplicity==0.7.6', 'entrypoints==0.2.2', 'enum34==1.1.6', 'functools32==3.2.3.post2', 'futures==3.0.5', 'html5lib==0.999', 'httplib2==0.9.1', 'imagesize==0.7.1', 'ipykernel==4.3.1', 'ipyparallel==5.0.1', 'ipython-genutils==0.1.0', 'ipython==4.2.0', 'ipywidgets==5.1.5', 'jinja2==2.8', 'jsonschema==2.5.1', 'jupyter-client==4.2.2', 'jupyter-core==4.1.0', 'lockfile==0.12.2', 'lxml==3.5.0', 'markupsafe==0.23', 'matlab-kernel==0.9.6', 'matplotlib==1.5.1', 'metakernel==0.13.0', 'mistune==0.7.2', 'nbconvert==4.2.0', 'nbformat==4.0.1', 'nose==1.3.7', 'notebook==4.2.1', 'numpy==1.11.0', 'pandas==0.18.1', 'path.py==8.2.1', 'pathlib2==2.1.0', 'pdfshuffler==0.6.0', 'pexpect==4.1.0', 'pickleshare==0.7.2', 'pillow==3.1.2', 'pip==8.1.2', 'ptyprocess==0.5.1', 'pycosat==0.6.1', 'pycurl==7.43.0', 'pygments==2.1.3', 'pygobject==3.20.0', 'pyicu==1.9.2', 'pymatbridge==0.5.2', 'pymysql==0.7.2', 'pyparsing==2.1.4', 'pypdf==1.13', 'python-dateutil==2.5.3', 'python-djvulibre==0.7', 'pytz==2016.4', 'pyxdg==0.25', 'pyyaml==3.11', 'pyzmq==15.2.0', 'qtconsole==4.2.1', 'requests==2.10.0', 'scour==0.32', 'setuptools==22.0.5', 'simplegeneric==0.8.1', 'singledispatch==3.4.0.3', 'six==1.10.0', 'snowballstemmer==1.2.1', 'sphinx==1.4.3', 'subprocess32==3.2.6', 'terminado==0.6', 'testpath==0.3', 'tornado==4.3', 'traitlets==4.2.1', 'unity-lens-photos==1.0', 'wheel==0.29.0', 'widgetsnbextension==1.2.3']
Comandos de teste malsucedidos para a informação do pacote / módulo / biblioteca
-
pip search wfdb dá pywfdb (0.1.1) - Python interface to WFDB library , então espero incluir também o módulo que você pode import .
-
find /usr/local/lib/python2.7/dist-packages -name '*wfdb*' retorna em branco.
-
pip list |grep wfdb retorna em branco.
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pip show pywfdb retorna em branco.
Código de teste que mostra que o módulo não foi encontrado
" http://www.pybytes.com/pywfdb/ "
import pywfdb
Tentando pesquisar o módulo
-
Não está instalado como pacote python normal porque não está em /usr/lib/python<version>/site-packages como descrito aqui ; Pesquisei todos os diretórios ( /usr/local/lib/python2.7/ e /usr/local/lib/python3.5/ ).
-
Não está em dist-packages com base na resposta . Comando ls /usr/local/lib/python2.7/dist-packages/ | grep wfdb retorna em branco.
-
>>> import site; site.getsitepackages() fornece a saída
['/usr/local/lib/python2.7/dist-packages', '/usr/lib/python2.7/dist-packages']
Saídas em branco para ls /usr/local/lib/python2.7/dist-packages | grep wfdb e ls /usr/lib/python2.7/dist-packages | grep wfdb .
Sistema: Linux Ubuntu 16.04 64 bit
Kernel Linux: 4,6
Opções do kernel do Linux: wl
Equipamento: Macbook Air 2013-mid
Python: 2.7.11+
Pip: última (8.1.2) pip install --upgrade pip retornos Requirement already up-to-date: pip in /home/masi/.local/lib/python2.7/site-packages
Últimos módulos pip : pip freeze --local | grep -v '^\-e' | cut -d = -f 1 | xargs -n1 pip install -U concluído antes de
Bash: 4.3.46 (1) -release (x86_64-pc-linux-gnu)