Parece que você está perdendo a biblioteca netcdf-* , embora eu não saiba exatamente qual.
sudo apt install netcdf-* deve funcionar se você usar o apt como gerenciador de pacotes.
Estou tentando instalar o pacote ncdf4 R em uma máquina remota usando um script R executado por um script de shell.
Eu tentei instalar outros pacotes e funciona bem, mas com o pacote ncdf4 ele não funciona.
Meu script R é o seguinte:
install.packages('ncdf4', repos = "http://cran.us.r-project.org")
A saída do script de shell é:
^LInstalling package into ‘/my/directory/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'http://cran.us.r-project.org/src/contrib/ncdf4_1.16.tar.gz'
Content type 'application/x-gzip' length 121420 bytes (118 KB)
==================================================
downloaded 118 KB
* installing *source* package ‘ncdf4’ ...
** package ‘ncdf4’ successfully unpacked and MD5 sums checked
configure.ac: starting
checking for nc-config... no
-----------------------------------------------------------------------------------
Error, nc-config not found or not executable. This is a script that comes with the
netcdf library, version 4.1-beta2 or later, and must be present for configuration
to succeed.
If you installed the netcdf library (and nc-config) in a standard location, nc-config
should be found automatically. Otherwise, you can specify the full path and name of
the nc-config script by passing the --with-nc-config=/full/path/nc-config argument
flag to the configure script. For example:
./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config
Special note for R users:
-------------------------
To pass the configure flag to R, use something like this:
R CMD INSTALL --configure-args="--with-nc-config=/home/joe/bin/nc-config" ncdf4
where you should replace /home/joe/bin etc. with the location where you have
installed the nc-config script that came with the netcdf 4 distribution.
-----------------------------------------------------------------------------------
ERROR: configuration failed for package ‘ncdf4’
* removing ‘/my/directory/R/x86_64-pc-linux-gnu-library/3.3/ncdf4’
The downloaded source packages are in
‘/tmp/RtmpJLxXFq/downloaded_packages’
Warning message:
In install.packages("ncdf4", repos = "http://cran.us.r-project.org") :
installation of package ‘ncdf4’ had non-zero exit status
Error in library(ncdf4) : there is no package called ‘ncdf4’
Execution halted
Você se deparou com essa questão antes? Alguma sugestão?
obrigado
Tags package-management r shell