Da seção INVOCATION da página do bash man :
When bash is invoked as an interactive login shell, or as a non-inter-
active shell with the --login option, it first reads and executes com-
mands from the file /etc/profile, if that file exists. After reading
that file, it looks for ~/.bash_profile, ~/.bash_login, and ~/.profile,
in that order, and reads and executes commands from the first one that
exists and is readable. The --noprofile option may be used when the
shell is started to inhibit this behavior.
Portanto, essas outras entradas do PATH provavelmente são de um desses outros arquivos de perfil.