Usando o Filezilla, você pode tentar isso, tirado dos fóruns do Filezilla .
Q:
It should be possible to configure one or more custom commands to be executed after connect (like setting the initial default remote directory).
A sample use case is connecting to an iSeries (AS/400): Depending on the configuration of the FTP server you have to issue the custom command "SITE NAMEFMT 1" before transferring files.
A:
There is an undocumented feature: PostLoginCommands.
Code:
<PostLoginCommands>
<Command>command1</Command>
<Command>command2</Command>
<Command>command3</Command>
.
.
.
</PostLoginCommands>
Must be entered directly into the
<server>
block insitemanager.xml
.
Não testado, mas acho que é o tipo certo de coisa para você?