Alterar o arquivo como este corrigiu tudo:
# Generated by iptables-save v1.4.12 on Sat Jul 13 07:41:12 2013
*filter
:INPUT ACCEPT [3137:3823422]
:FORWARD ACCEPT [0:0]
:OUTPUT ACCEPT [1877:121508]
-A OUTPUT -d [[SPECIFIC IP]] -j ACCEPT
-A OUTPUT -p tcp --destination-port 53 -j ACCEPT
-A OUTPUT -p udp --destination-port 53 -j ACCEPT
-A OUTPUT -p tcp --destination-port 953 -j ACCEPT
-A OUTPUT -m owner --uid-owner 1000 -j DROP
COMMIT
# Completed on Sat Jul 13 07:41:12 2013
Obrigado a gertvdijk por me dizer o que mudar.