Com base nas evidências de que o stackexhcange apareceu depois que eu postei minha pergunta, estou supondo que essa será a causa do problema. Estou instalando bibliotecas de 32 bits agora.
Ok, estou completamente confuso com isso. Estou instalando um software chamado InterPro Scan para meus superiores, e está reclamando de um executável que não existe. Por favor veja abaixo.
root@cpt:/usr/local/lib/iprscan# bin/Linux/seqret
bash: bin/Linux/seqret: No such file or directory
root@cpt:/usr/local/lib/iprscan# ls bin/Linux/seqret
bin/Linux/seqret
root@cpt:/usr/local/lib/iprscan# stat bin/Linux/seqret
File: 'bin/Linux/seqret'
Size: 949624 Blocks: 1856 IO Block: 4096 regular file
Device: 801h/2049d Inode: 38541532 Links: 1
Access: (0755/-rwxr-xr-x) Uid: ( 1257/ UNKNOWN) Gid: ( 1055/ UNKNOWN)
Access: 2013-06-17 17:28:41.317364148 -0500
Modify: 2009-12-16 05:57:46.000000000 -0600
Change: 2013-06-17 17:28:33.049363860 -0500
Birth: -
root@cpt:/usr/local/lib/iprscan# md5sum bin/Linux/seqret
bc08e679fb146bc47e6f41636dcc1f88 bin/Linux/seqret
root@cpt:/usr/local/lib/iprscan# file /usr/local/lib/iprscan/bin/binaries/seqret
/usr/local/lib/iprscan/bin/binaries/seqret: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.2.5, not stripped
Existe! Mas isso diz que não? Estou incrivelmente confuso.
root@cpt:/usr/local/lib/iprscan# /usr/local/lib/iprscan/bin/iprscan -cli -i /usr/local/lib/iprscan/test.seq -o /usr/local/lib/iprscan/test.out -format raw -goterms -iprlookup
Isso chama o script de wrapper:
/usr/local/lib/iprscan/conf/seqret.sh: line 18: /usr/local/lib/iprscan/bin/binaries/seqret: No such file or directory
/usr/local/lib/iprscan/bin/iprscan: checkParams: unable to create input files: formatSequences:
Esta é a chamada original para o script wrapper:
/usr/local/lib/iprscan/conf/seqret.sh /usr/local/lib/iprscan/tmp/20130617/iprscan-20130617-17561022/iprscan-20130617-17561022.seqs > /usr/local/lib/iprscan/tmp/20130617/iprscan-20130617-17561022/iprscan-20130617-17561022.input.formatted: exit status 127
Todos os arquivos de entrada existem.
O próprio script wrapper
root@cpt:/usr/local/lib/iprscan# cat /usr/local/lib/iprscan/conf/seqret.sh
#!/bin/bash
##### NOTE ####
# Should be already set by iprscan_wrapper.pl.
# If not just add the full path to your iprscan installation
#IPRSCAN_HOME=/your/path/here/to/iprscan
###############
IPRSCAN_HOME=/usr/local/lib/iprscan
#Needed for seqret & sixpack emboss applications
EMBOSS_ROOT=$IPRSCAN_HOME/conf
export EMBOSS_ROOT
EMBOSS_ACDROOT=$IPRSCAN_HOME/conf/acd
export EMBOSS_ACDROOT
# "$@" is related to the command line of formatcmd tag in file iprscan.conf.
$IPRSCAN_HOME/bin/binaries/seqret -osf fasta -auto -stdout "$@"
Com base nas evidências de que o stackexhcange apareceu depois que eu postei minha pergunta, estou supondo que essa será a causa do problema. Estou instalando bibliotecas de 32 bits agora.
Tags ubuntu