O Fat32 deve ser um pouco mais amigável ao Mac do que o NTFS. Depende da importância de alguns recursos do NTFS para você.
De PCmag
FAT32 is read/write compatible with a majority of recent and recently obsolete operating systems, including DOS, most flavors of Windows (up to and including 8), Mac OS X, and many flavors of UNIX-descended operating systems, including Linux and FreeBSD.
NTFS, on the other hand, is fully read/write compatible with Windows from Windows NT 3.1 and Windows XP up to and including Windows 8. Mac OS X 10.3 and beyond have NFTS read capabilities, but writing to a NTFS volume requires a third party software utility like Paragon NTFS for Mac. There are other hacks and workarounds for NTFS on the Mac, but in any case NTFS is only semi-compatible with OS X. NTFS on Linux systems is spotty for both read and write operations. Look for NTFS-3G driver support on your Linux support page to see if it's built in.
Se os recursos do NTFS forem importantes, você poderá tentar usar um dos utilitários de terceiros mencionados anteriormente para o Mac.